@eredux is there a reason you cannot explicitly define the local/inputs.conf to monitor the files you want?
E.G., rather than trying to monitor all of /var/* files and choking on the binary files, explicitly monitor the *.log files desired?
## Audit
[monitor:///var/log/audit.log*]
index = myauditindex
[monitor:///var/log/messages.log*]
index = myauditindex
sourcetype = myauditsourcetype
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