I'm having a problem with this as well. After I push the bundle, I see my connections and identities in the GUI. However, I get username/password error on all of the connections I have set up when I try to validate them.
I tried plain text passwords in my identities.conf file, but they did not encrypt after I pushed the bundle and restarted my search heads. I also tried leaving the encrypted passwords from my test setup, and they gave the same username/password error. If I enter the password in each individual GUI, I can validate my connections. So it seems to just be something with the passwords in identities.conf on each search head.
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